Services: Training
Name of service | Tag | Related links* | Key collection | |
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BioImage Informatics Index (BISE) |
BIII Bio Image informatics Index (www.biii.eu) is a knowledge database of software tools, test image databases and training materials for bio image analysis. Software tools are organized as full protocol of analysis (workflow), specific brick (component) to construct a workflow, or software platform or library (collection). They are described using Edam Bio Imaging, which is iteratively defined using this website. All entries are exposed following FAIR principles and accessible for other usage with (ODC-By) v1.0 license. |
bio.tools | RIR | |
Bioinformatics consulting and analysis of proteomics data |
Either as a cooperation or consultancy service. |
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BRENDA |
A comprehensive enzyme information system. It is the world’s largest and most widely information system on all aspects of enzymes, including function, structure, mutants, properties like stability, purification. Data download is possible as an integrated text filed or via SOAP. |
bio.toolsFAIRsharingTeSS | CDR | |
BYOD (Bring Your Own Data) events (ELIXIR Netherlands) |
ELIXIR-NL can help organise standard events that make data sources more FAIR by applying Linked Data, or help make data repository software more FAIR. Such meetings focus on one or two data sources, and will bring together your experts on the data content and on the usage of the data with experts in data modeling. As an important side-effect such events also educate the participants on what it means to make data FAIR in practice. |
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Computer-Assisted Structure Elucidation of Metabolites |
Either as a cooperation or consultancy service. contact [at] denbi.de |
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Consultation |
Expertise includes
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TeSS | ||
Data Clinic RDM |
Either as a cooperation or consultancy service. contact [at] denbi.de |
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Dissemination |
Dissemination events:
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Dodona |
Online environment to learn to code based on automatic feedback on the submissions of programming exercises |
bio.tools | ||
European Galaxy Server |
For analysis of high-throughput sequencing incorporating many tools, training, literature and guides |
bio.toolsTeSS | RIR | |
Gulbenkian Training Programme in Bioinformatics (GTPB) (ELIXIR Portugal) |
The GTPB runs face-to-face Bioinformatics Training Courses regularly at the Instituto Gulbenkian de Ciência. |
TeSS | ||
IMGT |
An integrated knowledge resource specialized in the immunoglobulins (IG) or antibodies, T cell receptors (TR), and major histocompatibility (MH) of human and other vertebrate species. |
bio.toolsFAIRsharing | ||
Lifemap |
A web tool and a mobile app for exploring the entire Tree of Life |
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Microbiome Analysis Toolbox |
A compilation of tools offering identification and quantification of microorganisms, working with cellular pathways, phylogenetic trees and microbial communities, including:
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MicroScope |
MicroScope is an integrated Web platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. It supports submissions of newly assembled genomes and metagenomes, and also provides analysis services for RNA-seq data. The user interface of MicroScope enables collaborative work in a rich comparative context to improve community-based curation efforts. |
bio.toolsFAIRsharingTeSS | ||
Norine |
Norine has been and remains the unique resource dedicated to nonribosomal peptides (NRPs). It contains a database complemented with analysis tools (structure comparison, inference of monomer structure from chemical structure, mass spectrum analysis, NRP annotation for submission to the database). NRPs are secondary metabolites produced by bacteria and fungi and display a diverse spectrum of biological activity. |
bio.tools | ||
Plant Genome Annotation |
Annotation of plant reference genomes and pangenomes, support and consulting. |
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Ready for BioData Management |
A capacity building and training programme in data management for the life sciences |
TeSS | ||
TeSS Training Portal |
A training materials portal that helps you to discover, package and disseminate training resources. It aggregates training information from the ELIXIR nodes, and also from third-party content providers. |
bio.toolsTeSS | ||
Training |
Interdisciplinary trainings in post‐genome technologies and computation |
TeSS | ||
Training (ELIXIR Estonia) |
Training events about tools developed in ELIXIR-EE (usually g:Profiler, MEM, ClustVis are taught). |
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Training (ELIXIR Finland) |
Courses in bioinformatics and HPC at CSC are open for academics, government and industry participants. |
TeSS | ||
Training (ELIXIR Italy) |
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TeSS | ||
Training (ELIXIR Luxembourg) |
Training provided by ELIXIR-LU focuses on the usage of the Node services, data management, efficient use of high-performance computing to analyse complex biomedical data, and reproducibility in research. |
TeSS | ||
Training (ELIXIR Netherlands) |
Most of the training organised in DTL/ELIXIR-NL and the associated Dutch research school on bioinformatics and systems biology (BioSB) are open to participants from any ELIXIR country. Training and training materials available are listed on dtls.nl and TeSS. Training and materials are developed on a diverse range of topics, including specific bioinformatics skills and workflows, as well as generic FAIR data knowledge and data stewardship. |
TeSS | ||
Training (ELIXIR Switzerland) |
SIB Training offers courses and workshops on various bioinformatics and data science-related fields to life scientists, clinicians and bioinformaticians. |
TeSS | ||
Training (ELIXIR-BE) |
Courses providing fundamental data skills for research, basic skills for research computing, and knowledge for research data management and ELIXIR Belgium’s Node Services. |
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Training centres (ELIXIR UK) |
The ELIXIR UK training centres include Cambridge Bioinformatics Training Centre, University of Cambridge, Edinburgh Genomics and Birmingham Metabolomics Training Centre. |
TeSS | ||
Training Course Data Stewardship |
Either as a cooperation or consultancy service. |
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Training Course RDM |
Either as a cooperation or consultancy service. contact [at] denbi.de |