Implementation Studies

Implementation Studies are short technical projects that guide future service development, drive standards adoption and connect ELIXIR Nodes (see Who we are).

They are funded through the budget of the ELIXIR Hub and form part of our ongoing activities in a particular Platform or Community. They are proposed by Platforms, agreed with the ELIXIR Heads of Nodes committee and approved by the ELIXIR Board.

Name of study Platform/Community Nodes involved
A Scalable approach to Personal FAIR Data Management and Analysis Human Data, Compute, Interoperability, Galaxy ELIXIR Netherlands, ELIXIR Italy, EMBL-EBI
AAI production Compute ELIXIR Czech Republic, ELIXIR Finland, ELIXIR Germany, ELIXIR Luxembourg, ELIXIR Spain
Annotation and curation of human genomic variations (2018-Variations) Human Data, Compute, Data, Interoperability ELIXIR Finland, EMBL-EBI, ELIXIR Switzerland, ELIXIR UK, ELIXIR Norway, ELIXIR Italy
Apple as a Model for Genomic Information Exchange Data, Plant Sciences ELIXIR Italy, ELIXIR Belgium , EMBL-EBI
Architecture for Software Containers at ELIXIR and its use by EXCELERATE Use Case Communities (2018-Biocontainers) Tools, Compute, Training, Human Data, Rare Diseases EMBL-EBI, ELIXIR Germany, ELIXIR Spain, ELIXIR Belgium , ELIXIR France, ELIXIR Denmark, ELIXIR Italy
Beacon & Beacon Network As A Service Human Data ELIXIR Finland, ELIXIR Switzerland, ELIXIR Spain, ELIXIR Belgium , ELIXIR France, ELIXIR Netherlands, ELIXIR Norway, ELIXIR Italy, EMBL-EBI
Bioschemas: Community Adoption and Training Interoperability ELIXIR UK, EMBL-EBI, ELIXIR France, ELIXIR Belgium , ELIXIR Netherlands, ELIXIR Italy
Compatible Cloud Analysis Platform Compute ELIXIR Finland, EMBL-EBI
Crowd-sourcing the annotation of public proteomics datasets to improve data reusability Proteomics EMBL-EBI, ELIXIR Belgium , ELIXIR Germany, ELIXIR Netherlands, ELIXIR Denmark, ELIXIR Switzerland, ELIXIR France, ELIXIR Sweden, ELIXIR Spain, ELIXIR Norway
Data Validation Interoperability, Tools, Human Data, Plant Sciences, Galaxy, Metabolomics, Marine Metagenomics ELIXIR Belgium , ELIXIR France, EMBL-EBI, ELIXIR UK
Developing learning paths for users of ELIXIR services Training, Industry ELIXIR UK, EMBL-EBI, ELIXIR Netherlands, ELIXIR France, ELIXIR Luxembourg, ELIXIR Estonia, ELIXIR Switzerland, ELIXIR Italy, ELIXIR Finland, ELIXIR Belgium
Enabling the reuse, extension, scaling, and reproducibility of scientific workflows Interoperability, Compute, Tools, Training, Galaxy ELIXIR France, ELIXIR UK, EMBL-EBI, ELIXIR Finland
Establishment of an ELIXIR Contextual Data Clearinghouse Data, Marine Metagenomics ELIXIR Norway, EMBL-EBI, ELIXIR Germany, ELIXIR Italy
Extending open proteomics data analysis pipelines in the cloud: Additional tools and focus on scalability, supporting the dramatic growth of public proteomics data Data, Compute, Tools, Proteomics ELIXIR Belgium , EMBL-EBI, ELIXIR Germany, ELIXIR France, ELIXIR Spain
FAIRification of Genomic Tracks Human Data, Interoperability ELIXIR Norway, EMBL-EBI, ELIXIR Spain
FAIRness of the current ELIXIR Core resources: Application (and test) of newly available FAIR metrics, and identification of steps to increase interoperability (2018-FAIRCDR) Data, Interoperability, Training, Rare Diseases ELIXIR Netherlands, ELIXIR UK, EMBL-EBI, ELIXIR Italy, ELIXIR Sweden
Galaxy Community Galaxy ELIXIR Belgium , ELIXIR France, ELIXIR Germany, ELIXIR Norway, ELIXIR Italy, ELIXIR Switzerland, ELIXIR Netherlands, ELIXIR Spain, ELIXIR UK, ELIXIR Czech Republic, ELIXIR Slovenia
Increasing Interoperability between ELIXIR Protein Structure and Sequence Resources and Expanding these Resources with 3D-Models of CATH Domains, built by SWISS-MODEL Data, Interoperability, Human Data ELIXIR UK, ELIXIR Switzerland, EMBL-EBI
Integrating ELIXIR Italy into ELIXIR activities Data, Human Data, Rare Disease, Interoperability, Tools, Marine Metagenomics ELIXIR Italy
Integrating reference taxonomic databases for metabarcoding and metagenomics identification (2018-taxometabarcode) Data, Marine Metagenomics ELIXIR Italy, EMBL-EBI
Integration and standardization of intrinsically disordered protein data (2018-IDPs) Data, Interoperability ELIXIR Italy, EMBL-EBI, ELIXIR Switzerland, ELIXIR Hungary, ELIXIR Ireland
Metabolite Identification (2018-Metabolomics) Metabolomics, Data, Interoperability, Tools ELIXIR Netherlands, EMBL-EBI, ELIXIR France, ELIXIR UK, ELIXIR Germany, ELIXIR Spain, ELIXIR Sweden, ELIXIR Italy, ELIXIR Estonia, ELIXIR Switzerland, ELIXIR Belgium
Towards Data Stewardship in ELIXIR: Training & Portal Training ELIXIR Netherlands, ELIXIR Czech Republic, ELIXIR Luxembourg, ELIXIR Switzerland, ELIXIR Slovenia, ELIXIR UK, ELIXIR Estonia, ELIXIR Portugal, ELIXIR France, ELIXIR Norway, EMBL-EBI, ELIXIR Sweden, ELIXIR Belgium
Using clouds and VMs for bioinformatics training Training, Compute, Galaxy ELIXIR Finland, ELIXIR Netherlands, ELIXIR Switzerland, ELIXIR France, ELIXIR UK, ELIXIR Belgium , ELIXIR Spain, ELIXIR Slovenia, ELIXIR Germany